J4_1J5A_006

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAGU*AAC*GGAACG*CAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1J5A_006 not in the Motif Atlas

Homologous match to J4_7A0S_010

Geometric discrepancy: 0.1252

The information below is about J4_7A0S_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_54165.1

Basepair signature

cWW-F-F-F-cWW-cWW-cWW-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

1J5A|1|A|G|2622
1J5A|1|A|A|2623
1J5A|1|A|G|2624
1J5A|1|A|U|2625
*
1J5A|1|A|A|2653
1J5A|1|A|A|2654
1J5A|1|A|C|2655
*
1J5A|1|A|G|2711
1J5A|1|A|G|2712
1J5A|1|A|A|2713
1J5A|1|A|A|2714
1J5A|1|A|C|2715
1J5A|1|A|G|2716
*
1J5A|1|A|C|2748
1J5A|1|A|A|2749
1J5A|1|A|G|2750
1J5A|1|A|C|2751

Current chains

Chain A

23S RRNA

Nearby chains