J4_1J5E_002
3D structure
- PDB id
- 1J5E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S Ribosomal Subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.05 Å
Loop
- Sequence
- GAG*CAUGUG*CAAAG*CGC
- Length
- 17 nucleotides
- Bulged bases
- 1J5E|1|A|A|197
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1J5E_002 not in the Motif Atlas
- Homologous match to J4_4LFB_002
- Geometric discrepancy: 0.0604
- The information below is about J4_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_88771.1
- Basepair signature
- cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW
- Number of instances in this motif group
- 1
Unit IDs
1J5E|1|A|G|142
1J5E|1|A|A|143
1J5E|1|A|G|144
*
1J5E|1|A|C|178
1J5E|1|A|A|179
1J5E|1|A|U|180
1J5E|1|A|G|181
1J5E|1|A|U|182
1J5E|1|A|G|183
*
1J5E|1|A|C|194
1J5E|1|A|A|195
1J5E|1|A|A|196
1J5E|1|A|A|197
1J5E|1|A|G|198
*
1J5E|1|A|C|219
1J5E|1|A|G|220
1J5E|1|A|C|221
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain T
- 30S RIBOSOMAL PROTEIN S20
Coloring options: