J4_1JJ2_001

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

1JJ2|1|0|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1JJ2_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0194

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

1JJ2|1|0|C|239
1JJ2|1|0|C|240
*
1JJ2|1|0|G|379
1JJ2|1|0|A|380
1JJ2|1|0|G|381
1JJ2|1|0|U|382
1JJ2|1|0|A|383
1JJ2|1|0|G|384
*
1JJ2|1|0|C|405
1JJ2|1|0|G|406
1JJ2|1|0|A|407
1JJ2|1|0|A|408
1JJ2|1|0|U|409
1JJ2|1|0|A|410
1JJ2|1|0|A|411
1JJ2|1|0|C|412
*
1JJ2|1|0|G|428
1JJ2|1|0|A|429
1JJ2|1|0|A|430
1JJ2|1|0|G|431

Current chains

Chain 0

23S RRNA

Nearby chains

Chain L

RIBOSOMAL PROTEIN L15E