Motif J4_94698.2 Version J4_94698.2 of this group appears in releases 4.7 to 4.7

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2	break		3		4		5		6		7		8	break		9		10		11		12		13		14	break		15		16		17		18	1-18	2-3	4-12	5-6	6-11	6-17	7-10	8-9	11-16	12-14	12-16	12-17	14-15
1	J4_9H3G_001	9H3G	0.1112	1	A	LSU rRNA	C	110	C	111	*	G	264	A	265	G	266	U	267	C	268	G	269	*	C	290	C	291	A	292	A	293	U	294	G	296	*	C	313	A	314	A	315	G	316	cWW	cWW	tHH	cSH	tWH	cSs	tHS	cWW	ntWW		ntWW	ntWW	cWW
2	J4_8P9A_012	8P9A	0.0778	1	AR	LSU rRNA	U	112	C	113	*	G	267	A	268	G	269	U	270	C	271	G	272	*	C	293	U	294	A	295	A	296	G	297	G	299	*	U	316	A	317	A	318	A	319	cWW	cWW	tHH	cSH	tWH	ncSs	tHS	cWW	ntWW			ntWW	cWW
3	J4_8GLP_001	8GLP	0.0674	1	L5	LSU rRNA	C	111	C	112	*	G	278	A	279	G	280	U	281	C	282	G	283	*	C	304	A	305	A	306	A	307	G	308	G	310	*	U	327	A	328	A	329	G	330	cWW	cWW	tHH	cSH	tWH	cSs	tHS	cWW	ntWW		ntWW	ntWW	cWW
4	J4_8OI5_001	8OI5	0.0000	1	1	LSU rRNA	U	111	C	112	*	G	267	A	268	G	269	U	270	C	271	G	272	*	C	293	U	294	A	295	A	296	G	297	G	299	*	U	316	A	317	A	318	A	319	cWW	cWW	tHH	cSH	tWH	cSs	ntHS	cWW			ntWW	ntWW	cWW
5	J4_9AXU_001	9AXU	0.0600	1	2	LSU rRNA	U	112	C	113	*	G	275	A	276	G	277	U	278	C	279	G	280	*	C	301	U	302	A	303	A	304	A	305	G	307	*	U	324	A	325	A	326	A	327	cWW	cWW	tHH	cSH	tWH	cSs	tHS	cWW	ntWW		ntWW	ntWW	cWW
6	J4_7A0S_001	7A0S	0.3294	2	X	LSU rRNA	C	245	C	246	*	G	383	A	384	G	385	U	386	A	387	G	388	*	U	412	G	413	A	414	A	415	U	416	G	419	*	C	434	A	435	A	436	G	437	cWW	cWW	ntHH	cSH	tWH		ntHS	cWW	ntWW			ntWW	cWW
7	J4_4WF9_001	4WF9	0.3622	2	X	LSU rRNA	C	271	C	272	*	G	416	A	417	G	418	U	419	A	420	C	421	*	G	445	G	446	A	447	A	448	U	449	G	452	*	U	467	A	468	A	469	G	470	cWW	cWW	ntHH	cSH	ntWH	cSs	tHS	cWW	ntWW	ncsS		ntWW	ncWW
8	J4_9E6Q_001	9E6Q	0.3451	2	1	LSU rRNA	C	249	C	250	*	G	404	A	405	G	406	U	407	A	408	C	409	*	G	430	G	431	A	432	A	433	C	434	G	437	*	C	453	A	454	A	455	G	456	cWW	cWW	tHH	cSH	tWH	ncSs	tHS	cWW	ntWW			ntWW	cWW
9	J4_4V9F_001	4V9F	0.3752	2	0	LSU rRNA	C	239	C	240	*	G	379	A	380	G	381	U	382	A	383	G	384	*	C	405	G	406	A	407	A	408	U	409	C	412	*	G	428	A	429	A	430	G	431	cWW	cWW	tHH	cSH	tWH	cSs	tHS	cWW			ntWW	ntWW	cWW
10	J4_8B0X_004	8B0X	0.4385	2	a	LSU rRNA	C	268	C	269	*	G	370	A	371	G	372	U	373	A	374	G	375	*	U	399	G	400	A	401	A	402	U	403	G	406	*	C	421	A	422	A	423	G	424	cWW	cWW	tHH	cSH	tWH	cSs	tHS	cWW	ntWW		ntWW	ntWW	cWW
11	J4_9DFE_001	9DFE	0.3628	2	1A	LSU rRNA	C	268	U	269	*	G	370	A	371	G	372	U	373	A	374	C	375	*	G	399	G	400	A	401	A	402	U	403	G	406	*	U	421	A	422	A	423	G	424	cWW	cWW	tHH	cSH	tWH	ncSs	tHS	cWW	ntWW			ntWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UCGAGUCGCUAAGUG*UAAA	2
CCGAGUCGCCAAUCG*CAAG	1
CCGAGUCGCAAAGCG*UAAG	1
UCGAGUCGCUAAAUG*UAAA	1
CCGAGUAGUGAAUCCG*CAAG	1
CCGAGUACGGAAUCUG*UAAG	1
CCGAGUACGGAACGCG*CAAG	1
CCGAGUAGCGAAUAAC*GAAG	1
CCGAGUAGUGAAUAUG*CAAG	1
CUGAGUACGGAAUCUG*UAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AGUCUAAGU*AA	2
AGUAGAAUCU*AA	2
AGUCCAAUC*AA	1
AGUCAAAGC*AA	1
AGUCUAAAU*AA	1
AGUAGAAUCC*AA	1
AGUAGAACGC*AA	1
AGUAGAAUAA*AA	1
AGUAGAAUAU*AA	1

Release history

Release	4.7
Date	2026-02-25
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (11)
Basepair signature: cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
Heat map statistics: Min 0.06 | Avg 0.30 | Max 0.61

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Coloring options: Nucleotide numbers

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