J4_1JJ2_003
3D structure
- PDB id
- 1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CAGCGAUAG*CG*CUGUC*GG
- Length
- 18 nucleotides
- Bulged bases
- 1JJ2|1|0|G|1378, 1JJ2|1|0|U|1380
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1JJ2_003 not in the Motif Atlas
- Homologous match to J4_4V9F_003
- Geometric discrepancy: 0.0206
- The information below is about J4_4V9F_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_75426.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
1JJ2|1|0|C|1374
1JJ2|1|0|A|1375
1JJ2|1|0|G|1376
1JJ2|1|0|C|1377
1JJ2|1|0|G|1378
1JJ2|1|0|A|1379
1JJ2|1|0|U|1380
1JJ2|1|0|A|1381
1JJ2|1|0|G|1382
*
1JJ2|1|0|C|1400
1JJ2|1|0|G|1401
*
1JJ2|1|0|C|1721
1JJ2|1|0|U|1722
1JJ2|1|0|G|1723
1JJ2|1|0|U|1724
1JJ2|1|0|C|1725
*
1JJ2|1|0|G|2050
1JJ2|1|0|G|2051
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain O
- RIBOSOMAL PROTEIN L19E
- Chain Q
- RIBOSOMAL PROTEIN L22
- Chain W
- RIBOSOMAL PROTEIN L31E
Coloring options: