J4_1JZX_008

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

1JZX|1|A|A|2265, 1JZX|1|A|A|2267, 1JZX|1|A|U|2323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1JZX_008 not in the Motif Atlas

Homologous match to J4_7A0S_009

Geometric discrepancy: 0.2787

The information below is about J4_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

1JZX|1|A|C|2264
1JZX|1|A|A|2265
1JZX|1|A|A|2266
1JZX|1|A|A|2267
1JZX|1|A|G|2268
*
1JZX|1|A|U|2322
1JZX|1|A|U|2323
1JZX|1|A|G|2324
1JZX|1|A|A|2325
1JZX|1|A|C|2326
*
1JZX|1|A|G|2349
1JZX|1|A|G|2350
1JZX|1|A|G|2351
*
1JZX|1|A|C|2360
1JZX|1|A|G|2361
1JZX|1|A|G|2362

Current chains

Chain A

23S rRNA

Nearby chains