J4_1JZZ_004

3D structure

PDB id

1JZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1JZZ_004 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.1401

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

1JZZ|1|A|G|1763
1JZZ|1|A|A|1764
1JZZ|1|A|C|1765
1JZZ|1|A|U|1766
1JZZ|1|A|G|1767
*
1JZZ|1|A|C|1779
1JZZ|1|A|A|1780
1JZZ|1|A|C|1781
1JZZ|1|A|A|1782
1JZZ|1|A|G|1783
*
1JZZ|1|A|U|1819
1JZZ|1|A|G|1820
1JZZ|1|A|A|1821
1JZZ|1|A|C|1822
*
1JZZ|1|A|G|1958
1JZZ|1|A|U|1959
1JZZ|1|A|A|1960
1JZZ|1|A|A|1961
1JZZ|1|A|C|1962

Current chains

Chain A

23S rRNA

Nearby chains