J4_1K73_001

3D structure

PDB id

1K73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Anisomycin Bound to the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

1K73|1|A|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1K73_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0211

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

1K73|1|A|C|239
1K73|1|A|C|240
*
1K73|1|A|G|379
1K73|1|A|A|380
1K73|1|A|G|381
1K73|1|A|U|382
1K73|1|A|A|383
1K73|1|A|G|384
*
1K73|1|A|C|405
1K73|1|A|G|406
1K73|1|A|A|407
1K73|1|A|A|408
1K73|1|A|U|409
1K73|1|A|A|410
1K73|1|A|A|411
1K73|1|A|C|412
*
1K73|1|A|G|428
1K73|1|A|A|429
1K73|1|A|A|430
1K73|1|A|G|431

Current chains

Chain A

23S RRNA

Nearby chains

Chain N

RIBOSOMAL PROTEIN L15E