3D structure

PDB id
1KC8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit
Experimental method
X-RAY DIFFRACTION
Resolution
3.01 Å

Loop

Sequence
CAGCGAUAG*CG*CUGUC*GG
Length
18 nucleotides
Bulged bases
1KC8|1|A|G|1378, 1KC8|1|A|U|1380
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_1KC8_003 not in the Motif Atlas
Homologous match to J4_4V9F_003
Geometric discrepancy: 0.0302
The information below is about J4_4V9F_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_89787.1
Basepair signature
cWW-F-cWW-F-F-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
1

Unit IDs

1KC8|1|A|C|1374
1KC8|1|A|A|1375
1KC8|1|A|G|1376
1KC8|1|A|C|1377
1KC8|1|A|G|1378
1KC8|1|A|A|1379
1KC8|1|A|U|1380
1KC8|1|A|A|1381
1KC8|1|A|G|1382
*
1KC8|1|A|C|1400
1KC8|1|A|G|1401
*
1KC8|1|A|C|1721
1KC8|1|A|U|1722
1KC8|1|A|G|1723
1KC8|1|A|U|1724
1KC8|1|A|C|1725
*
1KC8|1|A|G|2050
1KC8|1|A|G|2051

Current chains

Chain A
23S RRNA

Nearby chains

Chain Q
RIBOSOMAL PROTEIN L19E
Chain S
RIBOSOMAL PROTEIN L22
Chain Y
RIBOSOMAL PROTEIN L31E

Coloring options:


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