J4_1KD1_003
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAGCGAUAG*CG*CUGUC*GG
- Length
- 18 nucleotides
- Bulged bases
- 1KD1|1|A|G|1378, 1KD1|1|A|U|1380
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1KD1_003 not in the Motif Atlas
- Homologous match to J4_4V9F_003
- Geometric discrepancy: 0.0336
- The information below is about J4_4V9F_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_75426.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
1KD1|1|A|C|1374
1KD1|1|A|A|1375
1KD1|1|A|G|1376
1KD1|1|A|C|1377
1KD1|1|A|G|1378
1KD1|1|A|A|1379
1KD1|1|A|U|1380
1KD1|1|A|A|1381
1KD1|1|A|G|1382
*
1KD1|1|A|C|1400
1KD1|1|A|G|1401
*
1KD1|1|A|C|1721
1KD1|1|A|U|1722
1KD1|1|A|G|1723
1KD1|1|A|U|1724
1KD1|1|A|C|1725
*
1KD1|1|A|G|2050
1KD1|1|A|G|2051
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain Q
- RIBOSOMAL PROTEIN L19E
- Chain S
- RIBOSOMAL PROTEIN L22
- Chain Y
- RIBOSOMAL PROTEIN L31E
Coloring options: