J4_1KD1_009
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CUAUG*UUGAC*GAC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 1KD1|1|A|U|2322, 1KD1|1|A|U|2419
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1KD1_009 not in the Motif Atlas
- Homologous match to J4_4V9F_009
- Geometric discrepancy: 0.0416
- The information below is about J4_4V9F_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
1KD1|1|A|C|2319
1KD1|1|A|U|2320
1KD1|1|A|A|2321
1KD1|1|A|U|2322
1KD1|1|A|G|2323
*
1KD1|1|A|U|2377
1KD1|1|A|U|2378
1KD1|1|A|G|2379
1KD1|1|A|A|2380
1KD1|1|A|C|2381
*
1KD1|1|A|G|2407
1KD1|1|A|A|2408
1KD1|1|A|C|2409
*
1KD1|1|A|G|2418
1KD1|1|A|U|2419
1KD1|1|A|G|2420
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain 4
- RIBOSOMAL PROTEIN L44E
- Chain O
- RIBOSOMAL PROTEIN L18
- Chain R
- RIBOSOMAL PROTEIN L21E
Coloring options: