J4_1KQS_009

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAUG*UUGAC*GAC*GUG

Length

16 nucleotides

Bulged bases

1KQS|1|0|U|2322, 1KQS|1|0|U|2419

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1KQS_009 not in the Motif Atlas

Homologous match to J4_4V9F_009

Geometric discrepancy: 0.0786

The information below is about J4_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

1KQS|1|0|C|2319
1KQS|1|0|U|2320
1KQS|1|0|A|2321
1KQS|1|0|U|2322
1KQS|1|0|G|2323
*
1KQS|1|0|U|2377
1KQS|1|0|U|2378
1KQS|1|0|G|2379
1KQS|1|0|A|2380
1KQS|1|0|C|2381
*
1KQS|1|0|G|2407
1KQS|1|0|A|2408
1KQS|1|0|C|2409
*
1KQS|1|0|G|2418
1KQS|1|0|U|2419
1KQS|1|0|G|2420

Current chains

Chain 0

23S RRNA

Nearby chains

Chain 2

RIBOSOMAL PROTEIN L44E

Chain M

RIBOSOMAL PROTEIN L18

Chain P

RIBOSOMAL PROTEIN L21E