J4_1N33_002

3D structure

PDB id

1N33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

1N33|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1N33_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0729

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

1N33|1|A|G|142
1N33|1|A|A|143
1N33|1|A|G|144
*
1N33|1|A|C|178
1N33|1|A|A|179
1N33|1|A|U|180
1N33|1|A|G|181
1N33|1|A|U|182
1N33|1|A|G|183
*
1N33|1|A|C|194
1N33|1|A|A|195
1N33|1|A|A|196
1N33|1|A|A|197
1N33|1|A|G|198
*
1N33|1|A|C|219
1N33|1|A|G|220
1N33|1|A|C|221

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain T

30S RIBOSOMAL PROTEIN S20