J4_1N34_002

3D structure

PDB id

1N34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1N34_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1128

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

1N34|1|A|G|142
1N34|1|A|A|143
1N34|1|A|G|144
*
1N34|1|A|C|178
1N34|1|A|A|179
1N34|1|A|U|180
1N34|1|A|G|181
1N34|1|A|U|182
1N34|1|A|G|183
*
1N34|1|A|C|194
1N34|1|A|A|195
1N34|1|A|A|196
1N34|1|A|A|197
1N34|1|A|G|198
*
1N34|1|A|C|219
1N34|1|A|G|220
1N34|1|A|C|221

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain T

30S RIBOSOMAL PROTEIN S20