J4_1N8R_001

3D structure

PDB id

1N8R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of large ribosomal subunit in complex with virginiamycin M

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

1N8R|1|A|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1N8R_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0333

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

1N8R|1|A|C|239
1N8R|1|A|C|240
*
1N8R|1|A|G|379
1N8R|1|A|A|380
1N8R|1|A|G|381
1N8R|1|A|U|382
1N8R|1|A|A|383
1N8R|1|A|G|384
*
1N8R|1|A|C|405
1N8R|1|A|G|406
1N8R|1|A|A|407
1N8R|1|A|A|408
1N8R|1|A|U|409
1N8R|1|A|A|410
1N8R|1|A|A|411
1N8R|1|A|C|412
*
1N8R|1|A|G|428
1N8R|1|A|A|429
1N8R|1|A|A|430
1N8R|1|A|G|431

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L15E