J4_1N8R_009
3D structure
- PDB id
- 1N8R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of large ribosomal subunit in complex with virginiamycin M
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CUAUG*UUGAC*GAC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 1N8R|1|A|U|2322, 1N8R|1|A|U|2419
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1N8R_009 not in the Motif Atlas
- Homologous match to J4_4V9F_009
- Geometric discrepancy: 0.0539
- The information below is about J4_4V9F_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
1N8R|1|A|C|2319
1N8R|1|A|U|2320
1N8R|1|A|A|2321
1N8R|1|A|U|2322
1N8R|1|A|G|2323
*
1N8R|1|A|U|2377
1N8R|1|A|U|2378
1N8R|1|A|G|2379
1N8R|1|A|A|2380
1N8R|1|A|C|2381
*
1N8R|1|A|G|2407
1N8R|1|A|A|2408
1N8R|1|A|C|2409
*
1N8R|1|A|G|2418
1N8R|1|A|U|2419
1N8R|1|A|G|2420
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L44E
- Chain O
- 50S ribosomal protein L18P
- Chain R
- 50S ribosomal protein L21e
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