J4_1NJI_001

3D structure

PDB id

1NJI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of chloramphenicol bound to the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

1NJI|1|A|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1NJI_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0255

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

1NJI|1|A|C|239
1NJI|1|A|C|240
*
1NJI|1|A|G|379
1NJI|1|A|A|380
1NJI|1|A|G|381
1NJI|1|A|U|382
1NJI|1|A|A|383
1NJI|1|A|G|384
*
1NJI|1|A|C|405
1NJI|1|A|G|406
1NJI|1|A|A|407
1NJI|1|A|A|408
1NJI|1|A|U|409
1NJI|1|A|A|410
1NJI|1|A|A|411
1NJI|1|A|C|412
*
1NJI|1|A|G|428
1NJI|1|A|A|429
1NJI|1|A|A|430
1NJI|1|A|G|431

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L15E