J4_1NKW_001

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAG*CACC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1NKW_001 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1836

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

1NKW|1|0|C|308
1NKW|1|0|G|309
1NKW|1|0|A|310
1NKW|1|0|A|311
1NKW|1|0|G|312
*
1NKW|1|0|C|327
1NKW|1|0|A|328
1NKW|1|0|C|329
1NKW|1|0|C|330
*
1NKW|1|0|G|334
1NKW|1|0|A|335
1NKW|1|0|A|336
*
1NKW|1|0|U|348
1NKW|1|0|G|349
1NKW|1|0|U|350
1NKW|1|0|A|351
1NKW|1|0|G|352

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain S

50S ribosomal protein L24