J4_1NKW_005
3D structure
- PDB id
- 1NKW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GACUG*CACAG*UGAC*GUAAC
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1NKW_005 not in the Motif Atlas
- Homologous match to J4_7A0S_008
- Geometric discrepancy: 0.1518
- The information below is about J4_7A0S_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.5
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
1NKW|1|0|G|1763
1NKW|1|0|A|1764
1NKW|1|0|C|1765
1NKW|1|0|U|1766
1NKW|1|0|G|1767
*
1NKW|1|0|C|1779
1NKW|1|0|A|1780
1NKW|1|0|C|1781
1NKW|1|0|A|1782
1NKW|1|0|G|1783
*
1NKW|1|0|U|1819
1NKW|1|0|G|1820
1NKW|1|0|A|1821
1NKW|1|0|C|1822
*
1NKW|1|0|G|1958
1NKW|1|0|U|1959
1NKW|1|0|A|1960
1NKW|1|0|A|1961
1NKW|1|0|C|1962
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain A
- 50S ribosomal protein L2
Coloring options: