J4_1NKW_008

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGU*AAC*GGAACG*CAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1NKW_008 not in the Motif Atlas

Homologous match to J4_7A0S_010

Geometric discrepancy: 0.1298

The information below is about J4_7A0S_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_54165.1

Basepair signature

cWW-F-F-F-cWW-cWW-cWW-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

1NKW|1|0|G|2622
1NKW|1|0|A|2623
1NKW|1|0|G|2624
1NKW|1|0|U|2625
*
1NKW|1|0|A|2653
1NKW|1|0|A|2654
1NKW|1|0|C|2655
*
1NKW|1|0|G|2711
1NKW|1|0|G|2712
1NKW|1|0|A|2713
1NKW|1|0|A|2714
1NKW|1|0|C|2715
1NKW|1|0|G|2716
*
1NKW|1|0|C|2748
1NKW|1|0|A|2749
1NKW|1|0|G|2750
1NKW|1|0|C|2751

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain H

50S ribosomal protein L13

Chain I

50S ribosomal protein L14