J4_1NWY_001

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAG*CACC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1NWY_001 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.184

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

1NWY|1|0|C|308
1NWY|1|0|G|309
1NWY|1|0|A|310
1NWY|1|0|A|311
1NWY|1|0|G|312
*
1NWY|1|0|C|327
1NWY|1|0|A|328
1NWY|1|0|C|329
1NWY|1|0|C|330
*
1NWY|1|0|G|334
1NWY|1|0|A|335
1NWY|1|0|A|336
*
1NWY|1|0|U|348
1NWY|1|0|G|349
1NWY|1|0|U|350
1NWY|1|0|A|351
1NWY|1|0|G|352

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain C

ribosomal protein L4

Chain S

ribosomal protein L24