J4_1NWY_002

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

1NWY|1|0|G|1284, 1NWY|1|0|A|1285, 1NWY|1|0|U|1286, 1NWY|1|0|A|1287, 1NWY|1|0|A|1288, 1NWY|1|0|C|1663, 1NWY|1|0|G|1664

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1NWY_002 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.2401

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

1NWY|1|0|C|1283
1NWY|1|0|G|1284
1NWY|1|0|A|1285
1NWY|1|0|U|1286
1NWY|1|0|A|1287
1NWY|1|0|A|1288
1NWY|1|0|A|1289
*
1NWY|1|0|U|1307
1NWY|1|0|C|1308
*
1NWY|1|0|G|1662
1NWY|1|0|C|1663
1NWY|1|0|G|1664
1NWY|1|0|C|1665
*
1NWY|1|0|G|1992
1NWY|1|0|G|1993

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain L

ribosomal protein L17

Chain Q

ribosomal protein L22

Chain Z

ribosomal protein L32