J4_1NWY_003

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUUC*GGAAAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

1NWY|1|0|G|1324, 1NWY|1|0|U|1325, 1NWY|1|0|A|1354, 1NWY|1|0|A|1355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1NWY_003 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.281

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.2

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

1NWY|1|0|G|1323
1NWY|1|0|G|1324
1NWY|1|0|U|1325
1NWY|1|0|U|1326
1NWY|1|0|C|1327
*
1NWY|1|0|G|1351
1NWY|1|0|G|1352
1NWY|1|0|A|1353
1NWY|1|0|A|1354
1NWY|1|0|A|1355
1NWY|1|0|G|1356
*
1NWY|1|0|C|1417
1NWY|1|0|C|1418
*
1NWY|1|0|G|1613
1NWY|1|0|C|1614
1NWY|1|0|C|1615
1NWY|1|0|C|1616
1NWY|1|0|G|1617
1NWY|1|0|U|1618
1NWY|1|0|A|1619
1NWY|1|0|C|1620

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain 2

ribosomal protein L34

Chain R

ribosomal protein L23