J4_1Q7Y_001

3D structure

PDB id

1Q7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of CCdAP-Puromycin bound at the Peptidyl transferase center of the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

1Q7Y|1|A|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1Q7Y_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0384

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

1Q7Y|1|A|C|239
1Q7Y|1|A|C|240
*
1Q7Y|1|A|G|379
1Q7Y|1|A|A|380
1Q7Y|1|A|G|381
1Q7Y|1|A|U|382
1Q7Y|1|A|A|383
1Q7Y|1|A|G|384
*
1Q7Y|1|A|C|405
1Q7Y|1|A|G|406
1Q7Y|1|A|A|407
1Q7Y|1|A|A|408
1Q7Y|1|A|U|409
1Q7Y|1|A|A|410
1Q7Y|1|A|A|411
1Q7Y|1|A|C|412
*
1Q7Y|1|A|G|428
1Q7Y|1|A|A|429
1Q7Y|1|A|A|430
1Q7Y|1|A|G|431

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain N

L15 Ribosomal Protein