J4_1Q82_001

3D structure

PDB id

1Q82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of CC-Puromycin bound to the A-site of the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.98 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

1Q82|1|A|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1Q82_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0326

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

1Q82|1|A|C|239
1Q82|1|A|C|240
*
1Q82|1|A|G|379
1Q82|1|A|A|380
1Q82|1|A|G|381
1Q82|1|A|U|382
1Q82|1|A|A|383
1Q82|1|A|G|384
*
1Q82|1|A|C|405
1Q82|1|A|G|406
1Q82|1|A|A|407
1Q82|1|A|A|408
1Q82|1|A|U|409
1Q82|1|A|A|410
1Q82|1|A|A|411
1Q82|1|A|C|412
*
1Q82|1|A|G|428
1Q82|1|A|A|429
1Q82|1|A|A|430
1Q82|1|A|G|431

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain N

L15 Ribosomal Protein