J4_1Q82_008
3D structure
- PDB id
- 1Q82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of CC-Puromycin bound to the A-site of the 50S ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.98 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 1Q82|1|A|U|2012
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1Q82_008 not in the Motif Atlas
- Homologous match to J4_4V9F_008
- Geometric discrepancy: 0.0389
- The information below is about J4_4V9F_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.2
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 6
Unit IDs
1Q82|1|A|C|1889
1Q82|1|A|U|1890
1Q82|1|A|G|1891
*
1Q82|1|A|C|1946
1Q82|1|A|G|1947
*
1Q82|1|A|C|1965
1Q82|1|A|U|1966
1Q82|1|A|U|1967
1Q82|1|A|A|1968
1Q82|1|A|A|1969
1Q82|1|A|G|1970
1Q82|1|A|G|1971
1Q82|1|A|U|1972
1Q82|1|A|A|1973
1Q82|1|A|G|1974
*
1Q82|1|A|U|2008
1Q82|1|A|G|2009
1Q82|1|A|A|2010
1Q82|1|A|A|2011
1Q82|1|A|U|2012
1Q82|1|A|G|2013
Current chains
- Chain A
- 23S ribosomal rna
Nearby chains
- Chain 1
- L37Ae 50S ribosomal protein
- Chain C
- 50S ribosomal protein L2P
Coloring options: