J4_1Q86_008

3D structure

PDB id

1Q86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

1Q86|1|A|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1Q86_008 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.0459

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

1Q86|1|A|C|1889
1Q86|1|A|U|1890
1Q86|1|A|G|1891
*
1Q86|1|A|C|1946
1Q86|1|A|G|1947
*
1Q86|1|A|C|1965
1Q86|1|A|U|1966
1Q86|1|A|U|1967
1Q86|1|A|A|1968
1Q86|1|A|A|1969
1Q86|1|A|G|1970
1Q86|1|A|G|1971
1Q86|1|A|U|1972
1Q86|1|A|A|1973
1Q86|1|A|G|1974
*
1Q86|1|A|U|2008
1Q86|1|A|G|2009
1Q86|1|A|A|2010
1Q86|1|A|A|2011
1Q86|1|A|U|2012
1Q86|1|A|G|2013

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain 1

L37Ae 50S ribosomal protein

Chain C

50S ribosomal protein L2P