J4_1QVF_001

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

1QVF|1|0|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1QVF_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0241

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

1QVF|1|0|C|239
1QVF|1|0|C|240
*
1QVF|1|0|G|379
1QVF|1|0|A|380
1QVF|1|0|G|381
1QVF|1|0|U|382
1QVF|1|0|A|383
1QVF|1|0|G|384
*
1QVF|1|0|C|405
1QVF|1|0|G|406
1QVF|1|0|A|407
1QVF|1|0|A|408
1QVF|1|0|U|409
1QVF|1|0|A|410
1QVF|1|0|A|411
1QVF|1|0|C|412
*
1QVF|1|0|G|428
1QVF|1|0|A|429
1QVF|1|0|A|430
1QVF|1|0|G|431

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain L

L15 Ribosomal Protein