J4_1QVF_003

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAGCGAUAG*CG*CUGUC*GG

Length

18 nucleotides

Bulged bases

1QVF|1|0|G|1378, 1QVF|1|0|U|1380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1QVF_003 not in the Motif Atlas

Homologous match to J4_4V9F_003

Geometric discrepancy: 0.03

The information below is about J4_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_89787.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

1QVF|1|0|C|1374
1QVF|1|0|A|1375
1QVF|1|0|G|1376
1QVF|1|0|C|1377
1QVF|1|0|G|1378
1QVF|1|0|A|1379
1QVF|1|0|U|1380
1QVF|1|0|A|1381
1QVF|1|0|G|1382
*
1QVF|1|0|C|1400
1QVF|1|0|G|1401
*
1QVF|1|0|C|1721
1QVF|1|0|U|1722
1QVF|1|0|G|1723
1QVF|1|0|U|1724
1QVF|1|0|C|1725
*
1QVF|1|0|G|2050
1QVF|1|0|G|2051

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain O

50S ribosomal protein L19E

Chain Q

50S ribosomal protein L22P

Chain W

50S ribosomal protein L31e