J4_1QVG_007

3D structure

PDB id

1QVG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GACUG*CAUAG*UGAAU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1QVG_007 not in the Motif Atlas

Homologous match to J4_4V9F_007

Geometric discrepancy: 0.0302

The information below is about J4_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

1QVG|1|0|G|1828
1QVG|1|0|A|1829
1QVG|1|0|C|1830
1QVG|1|0|U|1831
1QVG|1|0|G|1832
*
1QVG|1|0|C|1844
1QVG|1|0|A|1845
1QVG|1|0|U|1846
1QVG|1|0|A|1847
1QVG|1|0|G|1848
*
1QVG|1|0|U|1883
1QVG|1|0|G|1884
1QVG|1|0|A|1885
1QVG|1|0|A|1886
1QVG|1|0|U|1887
*
1QVG|1|0|A|2015
1QVG|1|0|U|2016
1QVG|1|0|U|2017
1QVG|1|0|A|2018
1QVG|1|0|A|2019
1QVG|1|0|C|2020

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Y

L37Ae 50S ribosomal protein