J4_1S72_001

3D structure

PDB id

1S72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

1S72|1|0|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1S72_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0194

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

1S72|1|0|C|239
1S72|1|0|C|240
*
1S72|1|0|G|379
1S72|1|0|A|380
1S72|1|0|G|381
1S72|1|0|U|382
1S72|1|0|A|383
1S72|1|0|G|384
*
1S72|1|0|C|405
1S72|1|0|G|406
1S72|1|0|A|407
1S72|1|0|A|408
1S72|1|0|U|409
1S72|1|0|A|410
1S72|1|0|A|411
1S72|1|0|C|412
*
1S72|1|0|G|428
1S72|1|0|A|429
1S72|1|0|A|430
1S72|1|0|G|431

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15e