J4_1S72_007

3D structure

PDB id

1S72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GACUG*CAUAG*UGAAU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1S72_007 not in the Motif Atlas

Homologous match to J4_4V9F_007

Geometric discrepancy: 0.0163

The information below is about J4_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_07509.2

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

3

Unit IDs

1S72|1|0|G|1828
1S72|1|0|A|1829
1S72|1|0|C|1830
1S72|1|0|U|1831
1S72|1|0|G|1832
*
1S72|1|0|C|1844
1S72|1|0|A|1845
1S72|1|0|U|1846
1S72|1|0|A|1847
1S72|1|0|G|1848
*
1S72|1|0|U|1883
1S72|1|0|G|1884
1S72|1|0|A|1885
1S72|1|0|A|1886
1S72|1|0|U|1887
*
1S72|1|0|A|2015
1S72|1|0|U|2016
1S72|1|0|U|2017
1S72|1|0|A|2018
1S72|1|0|A|2019
1S72|1|0|C|2020

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae