J4_1S72_008

3D structure

PDB id

1S72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

1S72|1|0|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1S72_008 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.0336

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

1S72|1|0|C|1889
1S72|1|0|U|1890
1S72|1|0|G|1891
*
1S72|1|0|C|1946
1S72|1|0|G|1947
*
1S72|1|0|C|1965
1S72|1|0|U|1966
1S72|1|0|U|1967
1S72|1|0|A|1968
1S72|1|0|A|1969
1S72|1|0|G|1970
1S72|1|0|G|1971
1S72|1|0|U|1972
1S72|1|0|A|1973
1S72|1|0|G|1974
*
1S72|1|0|U|2008
1S72|1|0|G|2009
1S72|1|0|A|2010
1S72|1|0|A|2011
1S72|1|0|U|2012
1S72|1|0|G|2013

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P