J4_1SM1_005

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1SM1_005 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.1631

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

1SM1|1|0|G|1763
1SM1|1|0|A|1764
1SM1|1|0|C|1765
1SM1|1|0|U|1766
1SM1|1|0|G|1767
*
1SM1|1|0|C|1779
1SM1|1|0|A|1780
1SM1|1|0|C|1781
1SM1|1|0|A|1782
1SM1|1|0|G|1783
*
1SM1|1|0|U|1819
1SM1|1|0|G|1820
1SM1|1|0|A|1821
1SM1|1|0|C|1822
*
1SM1|1|0|G|1958
1SM1|1|0|U|1959
1SM1|1|0|A|1960
1SM1|1|0|A|1961
1SM1|1|0|C|1962

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L2