J4_1SM1_011

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

1SM1|1|0|A|2265, 1SM1|1|0|A|2267, 1SM1|1|0|U|2323, 1SM1|1|0|G|2324, 1SM1|1|0|G|2361

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1SM1_011 not in the Motif Atlas

Homologous match to J4_7A0S_009

Geometric discrepancy: 0.4606

The information below is about J4_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

1SM1|1|0|C|2264
1SM1|1|0|A|2265
1SM1|1|0|A|2266
1SM1|1|0|A|2267
1SM1|1|0|G|2268
*
1SM1|1|0|U|2322
1SM1|1|0|U|2323
1SM1|1|0|G|2324
1SM1|1|0|A|2325
1SM1|1|0|C|2326
*
1SM1|1|0|G|2349
1SM1|1|0|G|2350
1SM1|1|0|G|2351
*
1SM1|1|0|C|2360
1SM1|1|0|G|2361
1SM1|1|0|G|2362

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 1

50S RIBOSOMAL PROTEIN L33

Chain 3

50S RIBOSOMAL PROTEIN L35

Chain U

50S RIBOSOMAL PROTEIN L27