J4_1VQ5_003
3D structure
- PDB id
- 1VQ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the transition state analogue 'RAA' bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CAGCGAUAG*CG*CUGUC*GG
- Length
- 18 nucleotides
- Bulged bases
- 1VQ5|1|0|G|1378, 1VQ5|1|0|U|1380
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1VQ5_003 not in the Motif Atlas
- Homologous match to J4_4V9F_003
- Geometric discrepancy: 0.0333
- The information below is about J4_4V9F_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_89787.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
1VQ5|1|0|C|1374
1VQ5|1|0|A|1375
1VQ5|1|0|G|1376
1VQ5|1|0|C|1377
1VQ5|1|0|G|1378
1VQ5|1|0|A|1379
1VQ5|1|0|U|1380
1VQ5|1|0|A|1381
1VQ5|1|0|G|1382
*
1VQ5|1|0|C|1400
1VQ5|1|0|G|1401
*
1VQ5|1|0|C|1721
1VQ5|1|0|U|1722
1VQ5|1|0|G|1723
1VQ5|1|0|U|1724
1VQ5|1|0|C|1725
*
1VQ5|1|0|G|2050
1VQ5|1|0|G|2051
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain P
- 50S ribosomal protein L19E
- Chain R
- 50S ribosomal protein L22P
- Chain X
- 50S ribosomal protein L31e
Coloring options: