J4_1VQ8_004
3D structure
- PDB id
- 1VQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCDA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.2 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GUCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 1VQ8|1|0|U|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1VQ8_004 not in the Motif Atlas
- Homologous match to J4_4V9F_004
- Geometric discrepancy: 0.028
- The information below is about J4_4V9F_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77353.1
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
1VQ8|1|0|G|1416
1VQ8|1|0|G|1417
1VQ8|1|0|U|1418
1VQ8|1|0|U|1419
1VQ8|1|0|C|1420
*
1VQ8|1|0|G|1444
1VQ8|1|0|G|1445
1VQ8|1|0|U|1446
1VQ8|1|0|U|1447
1VQ8|1|0|A|1448
1VQ8|1|0|G|1449
*
1VQ8|1|0|C|1513
1VQ8|1|0|C|1514
*
1VQ8|1|0|G|1672
1VQ8|1|0|U|1673
1VQ8|1|0|C|1674
1VQ8|1|0|C|1675
1VQ8|1|0|G|1676
1VQ8|1|0|U|1677
1VQ8|1|0|A|1678
1VQ8|1|0|C|1679
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 1
- 50S ribosomal protein L37e
- Chain 2
- 50S ribosomal protein L39e
- Chain P
- 50S ribosomal protein L19E
- Chain S
- 50S ribosomal protein L23P
- Chain V
- 50S ribosomal protein L29P
Coloring options: