J4_1VQK_003
3D structure
- PDB id
- 1VQK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- CAGCGAUAG*CG*CUGUC*GG
- Length
- 18 nucleotides
- Bulged bases
- 1VQK|1|0|G|1378, 1VQK|1|0|U|1380
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1VQK_003 not in the Motif Atlas
- Homologous match to J4_4V9F_003
- Geometric discrepancy: 0.0638
- The information below is about J4_4V9F_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_75426.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
1VQK|1|0|C|1374
1VQK|1|0|A|1375
1VQK|1|0|G|1376
1VQK|1|0|C|1377
1VQK|1|0|G|1378
1VQK|1|0|A|1379
1VQK|1|0|U|1380
1VQK|1|0|A|1381
1VQK|1|0|G|1382
*
1VQK|1|0|C|1400
1VQK|1|0|G|1401
*
1VQK|1|0|C|1721
1VQK|1|0|U|1722
1VQK|1|0|G|1723
1VQK|1|0|U|1724
1VQK|1|0|C|1725
*
1VQK|1|0|G|2050
1VQK|1|0|G|2051
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain P
- 50S ribosomal protein L19E
- Chain R
- 50S ribosomal protein L22P
- Chain X
- 50S ribosomal protein L31e
Coloring options: