J4_1VQO_007

3D structure

PDB id

1VQO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

GACUG*CAUAG*UGAAU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1VQO_007 not in the Motif Atlas

Homologous match to J4_4V9F_007

Geometric discrepancy: 0.0495

The information below is about J4_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_07509.2

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

3

Unit IDs

1VQO|1|0|G|1828
1VQO|1|0|A|1829
1VQO|1|0|C|1830
1VQO|1|0|U|1831
1VQO|1|0|G|1832
*
1VQO|1|0|C|1844
1VQO|1|0|A|1845
1VQO|1|0|U|1846
1VQO|1|0|A|1847
1VQO|1|0|G|1848
*
1VQO|1|0|U|1883
1VQO|1|0|G|1884
1VQO|1|0|A|1885
1VQO|1|0|A|1886
1VQO|1|0|U|1887
*
1VQO|1|0|A|2015
1VQO|1|0|U|2016
1VQO|1|0|U|2017
1VQO|1|0|A|2018
1VQO|1|0|A|2019
1VQO|1|0|C|2020

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae