J4_1VVJ_016

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

1VVJ|1|XA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1VVJ_016 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1532

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

1VVJ|1|XA|G|142
1VVJ|1|XA|A|143
1VVJ|1|XA|G|144
*
1VVJ|1|XA|C|178
1VVJ|1|XA|A|179
1VVJ|1|XA|U|180
1VVJ|1|XA|G|181
1VVJ|1|XA|U|182
1VVJ|1|XA|G|183
*
1VVJ|1|XA|C|194
1VVJ|1|XA|A|195
1VVJ|1|XA|A|196
1VVJ|1|XA|A|197
1VVJ|1|XA|G|198
*
1VVJ|1|XA|C|219
1VVJ|1|XA|G|220
1VVJ|1|XA|C|221

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20