J4_1VVJ_027
3D structure
- PDB id
- 1VVJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.44 Å
Loop
- Sequence
- CAAAG*CUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 1VVJ|1|YA|A|2288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1VVJ_027 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.2088
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
1VVJ|1|YA|C|2285
1VVJ|1|YA|A|2286
1VVJ|1|YA|A|2287
1VVJ|1|YA|A|2288
1VVJ|1|YA|G|2289
*
1VVJ|1|YA|C|2343
1VVJ|1|YA|U|2344
1VVJ|1|YA|G|2345
1VVJ|1|YA|A|2346
1VVJ|1|YA|C|2347
*
1VVJ|1|YA|G|2370
1VVJ|1|YA|G|2371
1VVJ|1|YA|G|2372
*
1VVJ|1|YA|C|2381
1VVJ|1|YA|G|2382
1VVJ|1|YA|G|2383
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y0
- 50S ribosomal protein L27
- Chain Y6
- 50S ribosomal protein L34
- Chain Y8
- tRNA acceptor end mimic
- Chain YS
- 50S ribosomal protein L18
Coloring options: