J4_9DFE_009
3D structure
- PDB id
- 9DFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CAAAG*CUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 9DFE|1|1A|A|2288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9DFE|1|1A|C|2285
9DFE|1|1A|A|2286
9DFE|1|1A|A|2287
9DFE|1|1A|A|2288
9DFE|1|1A|G|2289
*
9DFE|1|1A|C|2343
9DFE|1|1A|U|2344
9DFE|1|1A|G|2345
9DFE|1|1A|A|2346
9DFE|1|1A|C|2347
*
9DFE|1|1A|G|2370
9DFE|1|1A|G|2371
9DFE|1|1A|G|2372
*
9DFE|1|1A|C|2381
9DFE|1|1A|G|2382
9DFE|1|1A|G|2383
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 16
- 50S ribosomal protein L33
- Chain 18
- 50S ribosomal protein L35
- Chain 1S
- 50S ribosomal protein L18
Coloring options: