J4_1VX2_001

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

1VX2|1|2|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX2|1|2|C|98
1VX2|1|2|A|99
1VX2|1|2|U|100
1VX2|1|2|U|101
1VX2|1|2|A|102
1VX2|1|2|A|103
1VX2|1|2|A|104
1VX2|1|2|U|105
1VX2|1|2|C|106
*
1VX2|1|2|G|355
1VX2|1|2|C|356
1VX2|1|2|C|357
*
1VX2|1|2|G|405
1VX2|1|2|U|406
1VX2|1|2|G|407
1VX2|1|2|A|408
1VX2|1|2|C|409
*
1VX2|1|2|G|431
1VX2|1|2|G|432

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Ribosomal protein eS4

Chain I

Ribosomal protein eS8

Chain L

Ribosomal protein uS17

Chain X

Ribosomal protein uS12