3D structure

PDB id
1VX2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
AAG*CGAAAG*CCAUAAACGAUG*UU
Length
23 nucleotides
Bulged bases
1VX2|1|2|A|672, 1VX2|1|2|A|1083
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

1VX2|1|2|A|671
1VX2|1|2|A|672
1VX2|1|2|G|673
*
1VX2|1|2|C|1032
1VX2|1|2|G|1033
1VX2|1|2|A|1034
1VX2|1|2|A|1035
1VX2|1|2|A|1036
1VX2|1|2|G|1037
*
1VX2|1|2|C|1078
1VX2|1|2|C|1079
1VX2|1|2|A|1080
1VX2|1|2|U|1081
1VX2|1|2|A|1082
1VX2|1|2|A|1083
1VX2|1|2|A|1084
1VX2|1|2|C|1085
1VX2|1|2|G|1086
1VX2|1|2|A|1087
1VX2|1|2|U|1088
1VX2|1|2|G|1089
*
1VX2|1|2|U|1160
1VX2|1|2|U|1161

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain L
Ribosomal protein uS17
Chain N
Ribosomal protein uS15
Chain O
Ribosomal protein uS11
Chain W
Ribosomal protein uS8
Chain X
Ribosomal protein uS12
Chain a
Ribosomal protein eS26

Coloring options:

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