J4_1VX6_006

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GACUG*CAUAG*UGAUU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1VX6_006 not in the Motif Atlas

Homologous match to J4_9PN5_006

Geometric discrepancy: 0.0532

The information below is about J4_9PN5_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.3

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

1VX6|1|A|G|2423
1VX6|1|A|A|2424
1VX6|1|A|C|2425
1VX6|1|A|U|2426
1VX6|1|A|G|2427
*
1VX6|1|A|C|2439
1VX6|1|A|A|2440
1VX6|1|A|U|2441
1VX6|1|A|A|2442
1VX6|1|A|G|2443
*
1VX6|1|A|U|2479
1VX6|1|A|G|2480
1VX6|1|A|A|2481
1VX6|1|A|U|2482
1VX6|1|A|U|2483
*
1VX6|1|A|A|2610
1VX6|1|A|U|2611
1VX6|1|A|U|2612
1VX6|1|A|A|2613
1VX6|1|A|A|2614
1VX6|1|A|C|2615

Current chains

Chain A

28S ribosomal RNA

Nearby chains