J4_1VX6_007

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

1VX6|1|A|U|2607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX6|1|A|C|2485
1VX6|1|A|U|2486
1VX6|1|A|G|2487
*
1VX6|1|A|C|2541
1VX6|1|A|G|2542
*
1VX6|1|A|C|2560
1VX6|1|A|U|2561
1VX6|1|A|U|2562
1VX6|1|A|A|2563
1VX6|1|A|A|2564
1VX6|1|A|G|2565
1VX6|1|A|G|2566
1VX6|1|A|U|2567
1VX6|1|A|A|2568
1VX6|1|A|G|2569
*
1VX6|1|A|U|2603
1VX6|1|A|G|2604
1VX6|1|A|A|2605
1VX6|1|A|A|2606
1VX6|1|A|U|2607
1VX6|1|A|G|2608

Current chains

Chain A

28S ribosomal RNA

Nearby chains