J4_1VY5_015

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CAAAG*CUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

1VY5|1|BA|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1VY5_015 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.1147

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

1VY5|1|BA|C|2285
1VY5|1|BA|A|2286
1VY5|1|BA|A|2287
1VY5|1|BA|A|2288
1VY5|1|BA|G|2289
*
1VY5|1|BA|C|2343
1VY5|1|BA|U|2344
1VY5|1|BA|G|2345
1VY5|1|BA|A|2346
1VY5|1|BA|C|2347
*
1VY5|1|BA|G|2370
1VY5|1|BA|G|2371
1VY5|1|BA|G|2372
*
1VY5|1|BA|C|2381
1VY5|1|BA|G|2382
1VY5|1|BA|G|2383

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L27

Chain B6

50S ribosomal protein L33

Chain B8

50S ribosomal protein L35

Chain BS

50S ribosomal protein L18