J4_1VY5_019
3D structure
- PDB id
- 1VY5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- GGG*CGAAAG*CCCUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 1VY5|1|CA|G|576, 1VY5|1|CA|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1VY5_019 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.0569
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
1VY5|1|CA|G|575
1VY5|1|CA|G|576
1VY5|1|CA|G|577
*
1VY5|1|CA|C|764
1VY5|1|CA|G|765
1VY5|1|CA|A|766
1VY5|1|CA|A|767
1VY5|1|CA|A|768
1VY5|1|CA|G|769
*
1VY5|1|CA|C|810
1VY5|1|CA|C|811
1VY5|1|CA|C|812
1VY5|1|CA|U|813
1VY5|1|CA|A|814
1VY5|1|CA|A|815
1VY5|1|CA|A|816
1VY5|1|CA|C|817
1VY5|1|CA|G|818
1VY5|1|CA|A|819
1VY5|1|CA|U|820
1VY5|1|CA|G|821
*
1VY5|1|CA|C|879
1VY5|1|CA|C|880
Current chains
- Chain CA
- 16S Ribosomal RNA
Nearby chains
- Chain CH
- 30S ribosomal protein S8
- Chain CL
- 30S ribosomal protein S12
- Chain CO
- 30S ribosomal protein S15
- Chain CQ
- 30S ribosomal protein S17
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
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