Motif J4_14595.2 Version J4_14595.2 of this group appears in releases 4.7 to 4.7

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2	break		3		4		5		6		7		8	break		9		10		11		12		13		14		15		16		17	break		18		19	1-19	2-3	5-12	7-10	8-9	11-12	17-18
1	J4_8GLP_016	8GLP	0.1259	4	S2	SSU rRNA	A	671	G	673	*	C	1032	G	1033	A	1034	A	1035	A	1036	G	1037	*	C	1078	C	1079	A	1080	PSU	1081	A	1082	A	1084	G	1086	U	1088	G	1089	*	U	1160	U	1161	cWW	cWW	tHW	ncWW	cWW		cWW
2	J4_8P9A_022	8P9A	0.0884	4	sR	SSU rRNA	A	622	G	624	*	C	975	G	976	A	977	A	978	A	979	G	980	*	C	1021	C	1022	A	1023	U	1024	A	1025	A	1027	U	1029	U	1031	G	1032	*	U	1103	U	1104	cWW	cWW	tHW	ncWW	cWW		cWW
3	J4_8CRE_022	8CRE	0.0791	4	CM	SSU rRNA	A	620	G	622	*	C	960	G	961	A	962	A	963	A	964	G	965	*	C	1006	C	1007	A	1008	U	1009	A	1010	A	1012	U	1014	U	1016	G	1017	*	U	1088	U	1089	cWW	cWW	tHW	ncWW	cWW		cWW
4	J4_9H3G_014	9H3G	0.0000	4	h1	SSU rRNA	A	624	G	626	*	C	976	G	977	A	978	A	979	A	980	G	981	*	C	1022	C	1023	A	1024	PSU	1025	A	1026	A	1028	G	1030	U	1032	G	1033	*	PSU	1104	U	1105	cWW	cWW	tHW	ncWW	cWW	ncSH	cWW
5	J4_8B0X_003	8B0X	0.0670	4	A	SSU rRNA	G	575	G	577	*	C	764	G	765	A	766	A	767	A	768	G	769	*	C	810	C	811	G	812	U	813	A	814	A	816	G	818	U	820	G	821	*	C	879	C	880	cWW	cWW	tHW	ncWW	cWW	ncSH	cWW
6	J4_4LFB_003	4LFB	0.0926	4	A	SSU rRNA	G	575	G	577	*	C	764	G	765	A	766	A	767	A	768	G	769	*	C	810	C	811	C	812	U	813	A	814	A	816	G	818	U	820	G	821	*	C	879	C	880	cWW	cWW	tHW	ncWW	cWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AAGCGAAAGCCAUAAACUAUG*UU	2
AAGCGAAAGCCA(PSU)AAACGAUG*UU	1
AAGCGAAAGCCA(PSU)AAACGAUG*PSUU	1
GCGCGAAAGCCGUAAACGAUG*CC	1
GGGCGAAAGCCCUAAACGAUG*CC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AGAAACA(PSU)AAACGAU*	2
AGAAACAUAAACUAU*	2
CGAAACGUAAACGAU*	1
GGAAACCUAAACGAU*	1

Release history

Release	4.7
Date	2026-02-25
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (6)
Basepair signature: cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Heat map statistics: Min 0.05 | Avg 0.09 | Max 0.16

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Coloring options: Nucleotide numbers

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