J4_1VY5_033

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

1VY5|1|AA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1VY5_033 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1032

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

1VY5|1|AA|G|142
1VY5|1|AA|A|143
1VY5|1|AA|G|144
*
1VY5|1|AA|C|178
1VY5|1|AA|A|179
1VY5|1|AA|U|180
1VY5|1|AA|G|181
1VY5|1|AA|U|182
1VY5|1|AA|G|183
*
1VY5|1|AA|C|194
1VY5|1|AA|A|195
1VY5|1|AA|A|196
1VY5|1|AA|A|197
1VY5|1|AA|G|198
*
1VY5|1|AA|C|219
1VY5|1|AA|G|220
1VY5|1|AA|C|221

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20